2024 Hth dna binding domain

Hth dna binding domain

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August undefined, 2024

WebHTH_psq domain-containing protein. Graphical summary. Zoom to residue level ... Psq domain; This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence. The actual alignment was detected with superfamily member pfam05225: WebAug 13, 2024 · The MBF1 protein consists of two domains, one MBF1 domain in the N-terminus and a DNA-binding domain Cro/C1-type HTH domain located in the C-terminus (Alavilli et al. 2024; Jaimes-Miranda and Chávez Montes 2024 ). In plants, MBF1 forms a multigenic family divided into group I and group II (Tsuda and Yamazaki 2004 ).

DNA binding HTH domain, Psq-type Gene Set - maayanlab.cloud

WebMay 24, 2024 · As DNA-binding proteins were frequently detected in our data, we tested several DNA-binding proteins, including two HTH-domain proteins (CcpA and SAUSA300_RS11115; Fig. 3f, g). Webis the DNA-binding domain and amino acid residues involved in transactivation overlap the HTH motif. Mutagenesis studies also aided in the identiﬁcation of the region important for dimerization. Structure-based sequence alignment and molecular modeling in conjunction with mutational analysis suggest that the HTH motif is part of a three-helix ... inductance ratio

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WebHTH ParBs share a similar domain organization although the primary sequence conservation is not high among members of this family. In general, the protein is divided into three regions: A central HTH DNA binding domain is flanked by a C-terminal dimer domain and an N-terminal region necessary for protein oligomerization (Figure 1A). Flexible ... WebThe cut- non-identical proteins with a DNA-binding HTH motif off for the rmsd varies slightly from motif to motif. As all the proteins with the (TRUE_HTH) and left a false positive set … WebMay 23, 2011 · To bind the LOV domain, the HTH domain presents the 1α-2α linker and 4α-helix, the latter of which typically provides a dimerization interface for DNA-bound HTH … logan airport address for gps

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WebThe myb-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of ~55 amino acids, typically occurring in a tandem repeat in eukaryotic transcription factors. The domain is named after the retroviral oncogene v-myb, and its cellular counterpart c-myb, which encode nuclear DNA-binding WebSep 20, 1996 · Structural classification of HTH DNA-binding domains and protein-DNA interaction modes This paper constitutes an attempt to rationalize the structural similarities and differences that are observed among the HTH DNA-binding domains, and the various modes of protein-DNA interactions. logan airport airline terminal mapWebSep 29, 2024 · Arc-like DNA binding domain. Arc repressor act by he cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognize bases in the major groove. logan airport arrivals and departures

"WebThere are 165601 HTH_MARR domains in 165349 proteins in SMART's nrdb database. Click on the following links for more information. Evolution (species in which this domain is found) Literature (relevant references for this domain) Structure (3D structures containing this domain) Links (links to other resources describing this domain) " - Hth dna binding domain

Hth dna binding domain

DNA–MBF1 study using molecular dynamics simulations

WebThe HTH is involved in DNA-binding into the major groove, where the recognition helix makes most DNA-contacts. The bacteriophage repressors regulate lysogeny/lytic … WebJan 17, 2024 · The eight potential transcription factors have HTH, THAP, zf-H2C2_2, and CSRNP_N domains and can participate in DNA replication, chromosome partitioning, cell cycle pathways and RNA processing and modification pathways [32,33,34,35], indicating crucial and diverse roles in gene expression network.

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WebDec 2, 2012 · Using the Erythrobacter litoralis protein EL222 model system which links LOV regulation to a helix-turn-helix (HTH) DNA binding domain, we demonstrated that the LOV domain binds and inhibits... WebMember of the TetR/AcrR family is two-domain proteins including an N-terminal HTH DNA-binding motif and a C-terminal ligand recognition domain. The C-terminal ligand recognition domain can recognize the very same compounds as their target transporters transferred.

WebSep 20, 1996 · Structural classification of HTH DNA-binding domains and protein-DNA interaction modes. This paper constitutes an attempt to rationalize the structural … WebDNA binding sites are a type of binding site found in DNA where other molecules may bind. DNA binding sites are distinct from other binding sites in that (1) they are part of a …

WebSMART: HTH_LUXR domain annotation HTH_LUXR helix_turn_helix, Lux Regulon There are 244814 HTH_LUXR domains in 244033 proteins in SMART's nrdb database. Click on the following links for more information. Evolution (species in which this domain is found) Literature (relevant references for this domain) Helix-turn-helix is a DNA-binding protein (DBP). The helix-turn-helix (HTH) is a major structural motif capable of binding DNA. Each monomer incorporates two α helices, joined by a short strand of amino acids, that bind to the major groove of DNA. The HTH motif occurs in many proteins that regulate gene … See more The discovery of the helix-turn-helix motif was based on similarities between several genes encoding transcription regulatory proteins from bacteriophage lambda and Escherichia coli: Cro, CAP, and λ repressor, which were found … See more The helix-turn-helix motif is a DNA-binding motif. The recognition and binding to DNA by helix-turn-helix proteins is done by the two α helices, one occupying the N-terminal end of the motif, the other at the C-terminus. In most cases, such as in the Cro repressor, the … See more • Struhl K (April 1989). "Helix-turn-helix, zinc-finger, and leucine-zipper motifs for eukaryotic transcriptional regulatory proteins". Trends in Biochemical Sciences. 14 (4): 137–40. See more Several attempts have been made to classify the helix-turn-helix motifs based on their structure and the spatial arrangement of … See more • DNA-binding domain • DNA-binding protein • Secondary structure • Zinc finger See more • Helix-turn-helix motif, lambda-like repressor, from EMBL • Full PDB entry for PDB ID 1LMB • Cro/C1-type HTH domain, more HTHs in PROSITE See more

WebJun 7, 2011 · Fig. S2. LOV-HTH interactions observed in the EL222 crystal structure are predicted to interfere with HTH dimerization and DNA binding. (A) Crystal structure of TraR/DNA complex (1), with TraR ...

WebCro/C1-type HTH DNA-binding domain This is a helix-turn-helix domain that probably binds to DNA. Links ? Statistics ? Structure ? pfam13443 is classified as a model that may span more than one domain. pfam13443 is a member of the superfamily cl22854. Sequence Alignment include consensus sequence ? Format: Row Display: Color Bits: Type Selection: inductance resistanceWebThe DNA-binding domains (DBD) of nuclear receptors share a core sequence of approximately 67 amino acids, which form a globular domain of three α-helices with two … inductance substitution boxhttp://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00418 logan airport airline terminalsWebDNA binding HTH domain, Psq-type Gene Set Genes 12 proteins predicted to have the DNA binding HTH domain, Psq-type protein domain from the InterPro Predicted Protein Domain Annotations dataset. Filter Showing 1 to 12 of 12 entries Previous 1 Next inductance vs permeabilityWebThere are 120969 HTH_ARSR domains in 120802 proteins in SMART's nrdb database. Click on the following links for more information. Evolution (species in which this domain … induct bcWebThe DNA-binding HTH domain is usually located in the C-terminal region of the protein; the N-terminal region often containing an autoinducer -binding domain or a … inductance switchWebThe myb-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of ~55 amino acids, typically occurring in a tandem repeat in eukaryotic transcription factors. The … logan airport baggage claim terminal e